It will always link to the source of the notification. If it's a comment on an activity entry you'll see "ABC commented on your post XYZ" where XYZ is a link to that activity entry. Comment replies work the same. The notification is for the comment that got replied to so you'll see that comment and its replies only; it has no idea the activity entry even exists for a comment reply notification and there's no way to change this behavior. Will review extending the core activity parsing to handle activity comment replies which maybe able to provide what you're looking for.
Kyle (Krileon) Community Builder Team Member Before posting on forums:
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